….
Set working directory
wd <- "/projects/timshel/sc-genetics/sc-genetics/src/GE-gtex/"
setwd(wd)
library(Seurat)
library(tidyverse)
dir.data <- "/data/rna-seq/gtex/v7"
file.data <- file.path(dir.data, "GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_tpm.gct.gz")
df.data_raw <- read_delim(file.data, delim="\t", skip=2) # skip 2 first lines
Parsed with column specification:
cols(
.default = col_double(),
Name = col_character(),
Description = col_character()
)
See spec(...) for full column specifications.